TACC: Starting up job 4242141
TACC: Starting parallel tasks...
Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks.
We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node).
___ __ ____ ___ ____ ____ __
/ __) /__\ ( _ \ / __)( ___)(_ _)___ /. |
( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _)
\___/(__)(__)(____/ \___/(____) (__) (_)
This is Gadget, version 4.0.
Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200
Code was compiled with the following compiler and flags:
mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc
Code was compiled with the following settings:
DOUBLEPRECISION=1
FOF
FOF_GROUP_MIN_LEN=32
FOF_LINKLENGTH=0.2
FOF_PRIMARY_LINK_TYPES=2
FOF_SECONDARY_LINK_TYPES=1+16+32
GADGET2_HEADER
IDS_64BIT
NTYPES=6
PERIODIC
PMGRID=128
SELFGRAVITY
SUBFIND
Running on 432 MPI tasks.
BEGRUN: Size of particle structure 136 [bytes]
BEGRUN: Size of sph particle structure 192 [bytes]
BEGRUN: Size of gravity tree node 104 [bytes]
BEGRUN: Size of neighbour tree node 192 [bytes]
BEGRUN: Size of subfind auxiliary data 104 [bytes]
-------------------------------------------------------------------------------------------------------------------------
AvailMem: Largest = 186449.59 Mb (on task= 351), Smallest = 186405.58 Mb (on task= 0), Average = 186428.78 Mb
Total Mem: Largest = 191515.35 Mb (on task= 351), Smallest = 191515.33 Mb (on task= 0), Average = 191515.33 Mb
Committed_AS: Largest = 5109.75 Mb (on task= 0), Smallest = 5065.76 Mb (on task= 351), Average = 5086.55 Mb
SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb
SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb
AllocMem: Largest = 5109.75 Mb (on task= 0), Smallest = 5065.76 Mb (on task= 351), Average = 5086.55 Mb
avail /dev/shm: Largest = 95321.54 Mb (on task= 351), Smallest = 95321.47 Mb (on task= 165), Average = 95321.51 Mb
-------------------------------------------------------------------------------------------------------------------------
Task=0 has the maximum commited memory and is host: c160-023.frontera.tacc.utexas.edu
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Obtaining parameters from file 'param.txt':
InitCondFile lcdm_gas_littleendian.dat
OutputDir output
SnapshotFileBase snap
OutputListFilename outputs_lcdm_gas.txt
ICFormat 3
SnapFormat 3
TimeLimitCPU 180000
CpuTimeBetRestartFile 7200
MaxMemSize 3000
TimeBegin 0.0909091
TimeMax 1
ComovingIntegrationOn 1
Omega0 0.2814
OmegaLambda 0.7186
OmegaBaryon 0.0464
HubbleParam 0.697
Hubble 0.1
BoxSize 400000
OutputListOn 0
TimeBetSnapshot 1.83842
TimeOfFirstSnapshot 0.047619
TimeBetStatistics 0.05
NumFilesPerSnapshot 1
MaxFilesWithConcurrentIO 1
ErrTolIntAccuracy 0.012
CourantFac 0.15
MaxSizeTimestep 0.025
MinSizeTimestep 0
TypeOfOpeningCriterion 1
ErrTolTheta 0.9
ErrTolThetaMax 1
ErrTolForceAcc 0.0025
TopNodeFactor 2.5
ActivePartFracForNewDomainDecomp 0.01
DesNumNgb 64
MaxNumNgbDeviation 3
UnitLength_in_cm 3.08568e+21
UnitMass_in_g 1.989e+43
UnitVelocity_in_cm_per_s 100000
GravityConstantInternal 0
DesLinkNgb 20
SofteningComovingClass0 1.5
SofteningComovingClass1 1.5
SofteningComovingClass2 1.5
SofteningComovingClass3 1.5
SofteningComovingClass4 1.5
SofteningComovingClass5 1.5
SofteningMaxPhysClass0 1.5
SofteningMaxPhysClass1 1.5
SofteningMaxPhysClass2 1.5
SofteningMaxPhysClass3 1.5
SofteningMaxPhysClass4 1.5
SofteningMaxPhysClass5 1.5
SofteningClassOfPartType0 0
SofteningClassOfPartType1 0
SofteningClassOfPartType2 0
SofteningClassOfPartType3 0
SofteningClassOfPartType4 0
SofteningClassOfPartType5 0
ArtBulkViscConst 1
MinEgySpec 0
InitGasTemp 1000
MALLOC: Allocation of shared memory took 17.2065 sec
BEGRUN: Hubble (internal units) = 0.1
BEGRUN: h = 0.697
BEGRUN: G (internal units) = 43018.7
BEGRUN: UnitMass_in_g = 1.989e+43
BEGRUN: UnitLenth_in_cm = 3.08568e+21
BEGRUN: UnitTime_in_s = 3.08568e+16
BEGRUN: UnitVelocity_in_cm_per_s = 100000
BEGRUN: UnitDensity_in_cgs = 6.76991e-22
BEGRUN: UnitEnergy_in_cgs = 1.989e+53
READIC: filenr=0, 'output/snap_208.hdf5' contains:
READIC: Type 0 (gas): 65709363 (tot= 65709363) masstab= 0
READIC: Type 1: 68034339 (tot= 68034339) masstab= 0
READIC: Type 2: 0 (tot= 0) masstab= 0
READIC: Type 3: 0 (tot= 0) masstab= 0
READIC: Type 4: 253555 (tot= 253555) masstab= 0
READIC: Type 5: 0 (tot= 0) masstab= 0
READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431.
READIC: reading block 0 (Coordinates)...
READIC: reading block 1 (Velocities)...
READIC: reading block 2 (ParticleIDs)...
READIC: reading block 3 (Masses)...
READIC: reading block 4 (InternalEnergy)...
READIC: reading block 5 (Density)...
Dataset Density not present for particle type 0, using zero.
READIC: reading block 6 (SmoothingLength)...
Dataset SmoothingLength not present for particle type 0, using zero.
READIC: reading done. Took 4.44638 sec, total size 6384.57 MB, corresponds to effective I/O rate of 1435.9 MB/sec
READIC: Total number of particles : 133997257
INIT: Testing ID uniqueness...
INIT: success. took=0.0750165 sec
DOMAIN: Begin domain decomposition (sync-point 0).
DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4
DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104
DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352
DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576
DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488
DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034
DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145
DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988
DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585
DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836
DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287
DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373
DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385
DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423
DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499
DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487
DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333
DOMAIN: NTopleaves=19272, determination of top-level tree involved 5 iterations and took 0.641101 sec
DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16
DOMAIN: total_cost=4 total_load=2
DOMAIN: best solution found after 1 iterations by task=183 for nextra=98, reaching maximum imbalance of 1.11952|1.11973
DOMAIN: combining multiple-domains took 0.0134632 sec
DOMAIN: exchange of 68287894 particles
DOMAIN: particle exchange done. (took 0.338472 sec)
DOMAIN: domain decomposition done. (took in total 1.00386 sec)
PEANO: Begin Peano-Hilbert order...
PEANO: done, took 0.0741211 sec.
INIT: Converting u -> entropy All.cf_a3inv=512
FOF: Begin to compute FoF group catalogue... (presently allocated=173.885 MB)
FOF: Comoving linking length: 11.3647
FOFTREE: Ngb-tree construction done. took 0.155617 sec <numnodes>=64584.3 NTopnodes=22025 NTopleaves=19272
FOF: Start linking particles (presently allocated=192.266 MB)
FOF: linking of small cells took 0.0018966 sec
FOF: local links done (took 0.177817 sec, avg-work=0.157517, imbalance=1.12174).
FOF: Marked=145736 out of the 68034339 primaries which are linked
FOF: begin linking across processors (presently allocated=194.088 MB)
FOF: have done 8022 cross links (processed 145736, took 0.0060592 sec)
FOF: have done 2096 cross links (processed 69729, took 0.00529359 sec)
FOF: have done 334 cross links (processed 9661, took 0.00480563 sec)
FOF: have done 70 cross links (processed 1579, took 0.00458547 sec)
FOF: have done 9 cross links (processed 297, took 0.00451973 sec)
FOF: have done 0 cross links (processed 32, took 0.0044747 sec)
FOF: Local groups found.
FOF: primary group finding took = 0.219479 sec
FOF: Start finding nearest dm-particle (presently allocated=192.266 MB)
FOF: fof-nearest iteration 1: need to repeat for 63259371 particles. (took = 0.11012 sec)
FOF: fof-nearest iteration 2: need to repeat for 51418782 particles. (took = 0.129107 sec)
FOF: fof-nearest iteration 3: need to repeat for 26930284 particles. (took = 0.137762 sec)
FOF: fof-nearest iteration 4: need to repeat for 7745695 particles. (took = 0.0901457 sec)
FOF: fof-nearest iteration 5: need to repeat for 949618 particles. (took = 0.0329355 sec)
FOF: fof-nearest iteration 6: need to repeat for 26218 particles. (took = 0.00777806 sec)
FOF: done finding nearest dm-particle
FOF: attaching gas and star particles to nearest dm particles took = 0.516259 sec
FOF: compiling local group data and catalogue took = 0.025982 sec
FOF: Total number of FOF groups with at least 32 particles: 486664
FOF: Largest FOF group has 278 particles.
FOF: Total number of particles in FOF groups: 133997257
FOF: group properties are now allocated.. (presently allocated=179.329 MB)
FOF: computation of group properties took = 0.00816469 sec
FOF: start assigning group numbers
FOF: Assigning of group numbers took = 0.0948367 sec
FOF: Finished computing FoF groups. Complete work took 1.07536 sec (presently allocated=174.304 MB)
SUBFIND: We now execute a parallel version of SUBFIND.
TREE: Full tree construction for all particles. (presently allocated=179.548 MB)
GRAVTREE: Tree construction done. took 0.524286 sec <numnodes>=92860.6 NTopnodes=22025 NTopleaves=19272 tree-build-scalability=0.763366
SUBFIND: finding total densities around all particles
SUBFIND: ngb iteration 1: need to repeat for 133997194 particles. (took 1.15088 sec)
SUBFIND: ngb iteration 2: need to repeat for 133997129 particles. (took 1.02002 sec)
SUBFIND: ngb iteration 3: need to repeat for 133997064 particles. (took 0.950375 sec)
SUBFIND: ngb iteration 4: need to repeat for 133997064 particles. (took 0.90303 sec)
SUBFIND: ngb iteration 5: need to repeat for 133996998 particles. (took 0.888771 sec)
SUBFIND: ngb iteration 6: need to repeat for 133996969 particles. (took 0.902178 sec)
SUBFIND: ngb iteration 7: need to repeat for 133996904 particles. (took 0.928573 sec)
SUBFIND: ngb iteration 8: need to repeat for 133996652 particles. (took 0.97367 sec)
SUBFIND: ngb iteration 9: need to repeat for 133980550 particles. (took 1.02706 sec)
SUBFIND: ngb iteration 10: need to repeat for 133298270 particles. (took 1.09051 sec)
SUBFIND: ngb iteration 11: need to repeat for 128597572 particles. (took 1.15667 sec)
SUBFIND: ngb iteration 12: need to repeat for 121028881 particles. (took 1.17918 sec)
SUBFIND: ngb iteration 13: need to repeat for 110826907 particles. (took 1.16596 sec)
SUBFIND: ngb iteration 14: need to repeat for 99856817 particles. (took 1.12327 sec)
SUBFIND: ngb iteration 15: need to repeat for 90233589 particles. (took 1.06477 sec)
SUBFIND: ngb iteration 16: need to repeat for 81976952 particles. (took 1.00176 sec)
SUBFIND: ngb iteration 17: need to repeat for 74409104 particles. (took 0.934491 sec)
SUBFIND: ngb iteration 18: need to repeat for 66819541 particles. (took 0.862997 sec)
SUBFIND: ngb iteration 19: need to repeat for 58499599 particles. (took 0.792219 sec)
SUBFIND: ngb iteration 20: need to repeat for 48541491 particles. (took 0.71371 sec)
SUBFIND: ngb iteration 21: need to repeat for 36697455 particles. (took 0.61506 sec)
SUBFIND: ngb iteration 22: need to repeat for 24237481 particles. (took 0.487819 sec)
SUBFIND: ngb iteration 23: need to repeat for 13200211 particles. (took 0.353959 sec)
SUBFIND: ngb iteration 24: need to repeat for 5665249 particles. (took 0.219572 sec)
SUBFIND: ngb iteration 25: need to repeat for 1782482 particles. (took 0.112637 sec)
SUBFIND: ngb iteration 26: need to repeat for 376472 particles. (took 0.0464049 sec)
SUBFIND: ngb iteration 27: need to repeat for 48910 particles. (took 0.0134168 sec)
SUBFIND: ngb iteration 28: need to repeat for 3845 particles. (took 0.00302687 sec)
SUBFIND: ngb iteration 29: need to repeat for 375 particles. (took 0.00119045 sec)
SUBFIND: ngb iteration 30: need to repeat for 195 particles. (took 0.00130528 sec)
SUBFIND: ngb iteration 31: need to repeat for 192 particles. (took 0.00119413 sec)
SUBFIND: ngb iteration 32: need to repeat for 192 particles. (took 0.00119508 sec)
SUBFIND: ngb iteration 33: need to repeat for 175 particles. (took 0.00129886 sec)
SUBFIND: ngb iteration 34: need to repeat for 125 particles. (took 0.00109544 sec)
SUBFIND: ngb iteration 35: need to repeat for 80 particles. (took 0.000756523 sec)
SUBFIND: ngb iteration 36: need to repeat for 23 particles. (took 0.000481039 sec)
SUBFIND: iteration to correct primary neighbor count and density estimate took 21.699 sec
SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0
SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0
SUBFIND: (The adopted size-limit for the collective algorithm was 133997257 particles, for threshold size factor 0.6)
SUBFIND: The other 486664 FOF halos are treated in parallel with serial code
SUBFIND: subfind_distribute_groups() took 0.0025476 sec
SUBFIND: particle balance=1.11945
SUBFIND: subfind_exchange() took 0.449892 sec
SUBFIND: particle balance for processing=1.00042
SUBFIND: subdomain decomposition took 0.104699 sec
SUBFIND: serial subfind subdomain decomposition took 0.103459 sec
SUBFIND: subfind_hbt_single_group() processing for Ngroups=1127 took 29.9075 sec
SUBFIND: root-task=0: Serial processing of halo 0 took 30.1631
SUBFIND: Processing overall took (total time=30.8473 sec)
SUBFIND: 0 out of 71499 decisions, fraction 0, where influenced by previous subhalo size
ALLOCATE: Changing to MaxPart = 516966
ALLOCATE: Changing to MaxPartSph = 253510
SUBFIND: subfind_exchange() (for return to original CPU) took 0.513774 sec
TREE: Full tree construction for all particles. (presently allocated=161.596 MB)
GRAVTREE: Tree construction done. took 1.4612 sec <numnodes>=92860.6 NTopnodes=22025 NTopleaves=19272 tree-build-scalability=0.763366
SUBFIND: SO iteration 1: need to repeat for 486664 halo centers. (took 0.0173027 sec)
SUBFIND: SO iteration 2: need to repeat for 486664 halo centers. (took 0.0155313 sec)
SUBFIND: SO iteration 3: need to repeat for 486664 halo centers. (took 0.0156497 sec)
SUBFIND: SO iteration 4: need to repeat for 486664 halo centers. (took 0.0145352 sec)
SUBFIND: SO iteration 5: need to repeat for 486664 halo centers. (took 0.0144368 sec)
SUBFIND: SO iteration 6: need to repeat for 486664 halo centers. (took 0.0143931 sec)
SUBFIND: SO iteration 7: need to repeat for 486664 halo centers. (took 0.0146277 sec)
SUBFIND: SO iteration 8: need to repeat for 486664 halo centers. (took 0.0143582 sec)
SUBFIND: SO iteration 9: need to repeat for 486664 halo centers. (took 0.014807 sec)
SUBFIND: SO iteration 10: need to repeat for 486664 halo centers. (took 0.01513 sec)
SUBFIND: SO iteration 11: need to repeat for 486664 halo centers. (took 0.0159094 sec)
SUBFIND: SO iteration 12: need to repeat for 486664 halo centers. (took 0.0144218 sec)
SUBFIND: SO iteration 13: need to repeat for 486664 halo centers. (took 0.0144545 sec)
SUBFIND: SO iteration 14: need to repeat for 486664 halo centers. (took 0.0143389 sec)
SUBFIND: SO iteration 15: need to repeat for 486664 halo centers. (took 0.0143015 sec)
SUBFIND: SO iteration 16: need to repeat for 5095 halo centers. (took 0.0144616 sec)
SUBFIND: SO iteration 17: need to repeat for 50 halo centers. (took 0.000836521 sec)
SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000149559 sec)
SUBFIND: SO iteration 1: need to repeat for 486664 halo centers. (took 0.0144705 sec)
SUBFIND: SO iteration 2: need to repeat for 486664 halo centers. (took 0.0143854 sec)
SUBFIND: SO iteration 3: need to repeat for 486664 halo centers. (took 0.0144758 sec)
SUBFIND: SO iteration 4: need to repeat for 486664 halo centers. (took 0.0141404 sec)
SUBFIND: SO iteration 5: need to repeat for 486664 halo centers. (took 0.0142268 sec)
SUBFIND: SO iteration 6: need to repeat for 486664 halo centers. (took 0.0143555 sec)
SUBFIND: SO iteration 7: need to repeat for 486664 halo centers. (took 0.0143335 sec)
SUBFIND: SO iteration 8: need to repeat for 486664 halo centers. (took 0.0148432 sec)
SUBFIND: SO iteration 9: need to repeat for 486664 halo centers. (took 0.01451 sec)
SUBFIND: SO iteration 10: need to repeat for 486664 halo centers. (took 0.0143423 sec)
SUBFIND: SO iteration 11: need to repeat for 486664 halo centers. (took 0.0147545 sec)
SUBFIND: SO iteration 12: need to repeat for 486664 halo centers. (took 0.0142834 sec)
SUBFIND: SO iteration 13: need to repeat for 486664 halo centers. (took 0.0142208 sec)
SUBFIND: SO iteration 14: need to repeat for 486664 halo centers. (took 0.0141826 sec)
SUBFIND: SO iteration 15: need to repeat for 486664 halo centers. (took 0.0146014 sec)
SUBFIND: SO iteration 16: need to repeat for 2547 halo centers. (took 0.0139856 sec)
SUBFIND: SO iteration 17: need to repeat for 21 halo centers. (took 0.000533506 sec)
SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000134936 sec)
SUBFIND: SO iteration 1: need to repeat for 486664 halo centers. (took 0.0142698 sec)
SUBFIND: SO iteration 2: need to repeat for 486664 halo centers. (took 0.0152653 sec)
SUBFIND: SO iteration 3: need to repeat for 486664 halo centers. (took 0.0147914 sec)
SUBFIND: SO iteration 4: need to repeat for 486664 halo centers. (took 0.0144832 sec)
SUBFIND: SO iteration 5: need to repeat for 486664 halo centers. (took 0.0143845 sec)
SUBFIND: SO iteration 6: need to repeat for 486664 halo centers. (took 0.0143335 sec)
SUBFIND: SO iteration 7: need to repeat for 486664 halo centers. (took 0.0147552 sec)
SUBFIND: SO iteration 8: need to repeat for 486664 halo centers. (took 0.0143779 sec)
SUBFIND: SO iteration 9: need to repeat for 486664 halo centers. (took 0.0143278 sec)
SUBFIND: SO iteration 10: need to repeat for 486664 halo centers. (took 0.014271 sec)
SUBFIND: SO iteration 11: need to repeat for 486664 halo centers. (took 0.014276 sec)
SUBFIND: SO iteration 12: need to repeat for 486664 halo centers. (took 0.0143147 sec)
SUBFIND: SO iteration 13: need to repeat for 486664 halo centers. (took 0.0143185 sec)
SUBFIND: SO iteration 14: need to repeat for 486664 halo centers. (took 0.0147149 sec)
SUBFIND: SO iteration 15: need to repeat for 486664 halo centers. (took 0.0143352 sec)
SUBFIND: SO iteration 16: need to repeat for 5244 halo centers. (took 0.0141088 sec)
SUBFIND: SO iteration 17: need to repeat for 50 halo centers. (took 0.000859182 sec)
SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.00014508 sec)
SUBFIND: SO iteration 1: need to repeat for 486664 halo centers. (took 0.0142799 sec)
SUBFIND: SO iteration 2: need to repeat for 486664 halo centers. (took 0.0154753 sec)
SUBFIND: SO iteration 3: need to repeat for 486664 halo centers. (took 0.0146715 sec)
SUBFIND: SO iteration 4: need to repeat for 486664 halo centers. (took 0.0152383 sec)
SUBFIND: SO iteration 5: need to repeat for 486664 halo centers. (took 0.0152423 sec)
SUBFIND: SO iteration 6: need to repeat for 486664 halo centers. (took 0.0153443 sec)
SUBFIND: SO iteration 7: need to repeat for 486664 halo centers. (took 0.0153894 sec)
SUBFIND: SO iteration 8: need to repeat for 486664 halo centers. (took 0.0151583 sec)
SUBFIND: SO iteration 9: need to repeat for 486664 halo centers. (took 0.0153199 sec)
SUBFIND: SO iteration 10: need to repeat for 486664 halo centers. (took 0.0153792 sec)
SUBFIND: SO iteration 11: need to repeat for 486664 halo centers. (took 0.015173 sec)
SUBFIND: SO iteration 12: need to repeat for 486664 halo centers. (took 0.0157808 sec)
SUBFIND: SO iteration 13: need to repeat for 486664 halo centers. (took 0.0156829 sec)
SUBFIND: SO iteration 14: need to repeat for 486664 halo centers. (took 0.0158556 sec)
SUBFIND: SO iteration 15: need to repeat for 486664 halo centers. (took 0.0162868 sec)
SUBFIND: SO iteration 16: need to repeat for 251450 halo centers. (took 0.0167729 sec)
SUBFIND: SO iteration 17: need to repeat for 5184 halo centers. (took 0.0102291 sec)
SUBFIND: SO iteration 18: need to repeat for 173 halo centers. (took 0.00107728 sec)
SUBFIND: SO iteration 19: need to repeat for 1 halo centers. (took 0.000158666 sec)
SUBFIND: determining spherical overdensity masses took 0.963875 sec
SUBFIND: assembled and ordered groups and subhalos (took 0.0772726 sec)
FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1)
FOF/SUBFIND: writing group catalogue block 0 (GroupLen)...
FOF/SUBFIND: writing group catalogue block 1 (GroupMass)...
FOF/SUBFIND: writing group catalogue block 2 (GroupPos)...
FOF/SUBFIND: writing group catalogue block 3 (GroupVel)...
FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)...
FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)...
FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)...
FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)...
FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)...
FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)...
FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)...
FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)...
FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)...
FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)...
FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)...
FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)...
FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)...
FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)...
FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)...
FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)...
FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)...
FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)...
FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)...
FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)...
FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)...
FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)...
FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)...
FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)...
FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)...
FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)...
FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)...
FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)...
FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)...
FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)...
FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)...
FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)...
FOF/SUBFIND: Group catalogues saved. took = 1.45664 sec, total size 196.628 MB, corresponds to effective I/O rate of 134.987 MB/sec
SUBFIND: Subgroup catalogues saved. took = 1.45764 sec
SUBFIND: Finished with SUBFIND. (total time=58.0697 sec)
SUBFIND: Total number of subhalos with at least 20 particles: 557994
SUBFIND: Largest subhalo has 278 particles/cells.
SUBFIND: Total number of particles/cells in subhalos: 133997257
FOF: preparing output order of particles took 1.38898 sec
SNAPSHOT: writing snapshot file #208 @ time 0.125 ...
SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1)
SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5'
SNAPSHOT: writing snapshot block 0 (Coordinates)...
SNAPSHOT: writing snapshot block 1 (Velocities)...
SNAPSHOT: writing snapshot block 2 (ParticleIDs)...
SNAPSHOT: writing snapshot block 3 (Masses)...
SNAPSHOT: writing snapshot block 4 (InternalEnergy)...
SNAPSHOT: writing snapshot block 5 (Density)...
SNAPSHOT: writing snapshot block 6 (SmoothingLength)...
SNAPSHOT: done with writing snapshot. Took 7.39641 sec, total size 5352.41 MB, corresponds to effective I/O rate of 723.65 MB/sec
endrun called, calling MPI_Finalize()
bye!
Abort(806969615) on node 110 (rank 110 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack:
PMPI_Finalize(214)...............: MPI_Finalize failed
PMPI_Finalize(159)...............:
MPID_Finalize(1288)..............:
MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy)
TACC: MPI job exited with code: 15
TACC: Shutdown complete. Exiting.