TACC: Starting up job 4243127
TACC: Starting parallel tasks...
Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks.
We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node).
___ __ ____ ___ ____ ____ __
/ __) /__\ ( _ \ / __)( ___)(_ _)___ /. |
( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _)
\___/(__)(__)(____/ \___/(____) (__) (_)
This is Gadget, version 4.0.
Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200
Code was compiled with the following compiler and flags:
mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc
Code was compiled with the following settings:
DOUBLEPRECISION=1
FOF
FOF_GROUP_MIN_LEN=32
FOF_LINKLENGTH=0.2
FOF_PRIMARY_LINK_TYPES=2
FOF_SECONDARY_LINK_TYPES=1+16+32
GADGET2_HEADER
IDS_64BIT
NTYPES=6
PERIODIC
PMGRID=128
SELFGRAVITY
SUBFIND
Running on 864 MPI tasks.
BEGRUN: Size of particle structure 136 [bytes]
BEGRUN: Size of sph particle structure 192 [bytes]
BEGRUN: Size of gravity tree node 104 [bytes]
BEGRUN: Size of neighbour tree node 192 [bytes]
BEGRUN: Size of subfind auxiliary data 104 [bytes]
-------------------------------------------------------------------------------------------------------------------------
AvailMem: Largest = 186341.33 Mb (on task= 756), Smallest = 186200.24 Mb (on task= 648), Average = 186288.51 Mb
Total Mem: Largest = 191386.89 Mb (on task= 837), Smallest = 191386.89 Mb (on task= 0), Average = 191386.89 Mb
Committed_AS: Largest = 5186.65 Mb (on task= 648), Smallest = 5045.56 Mb (on task= 756), Average = 5098.38 Mb
SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb
SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb
AllocMem: Largest = 5186.65 Mb (on task= 648), Smallest = 5045.56 Mb (on task= 756), Average = 5098.38 Mb
avail /dev/shm: Largest = 95257.22 Mb (on task= 513), Smallest = 95257.16 Mb (on task= 754), Average = 95257.20 Mb
-------------------------------------------------------------------------------------------------------------------------
Task=0 has the maximum commited memory and is host: c203-034.frontera.tacc.utexas.edu
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Obtaining parameters from file 'param.txt':
InitCondFile lcdm_gas_littleendian.dat
OutputDir output
SnapshotFileBase snap
OutputListFilename outputs_lcdm_gas.txt
ICFormat 3
SnapFormat 3
TimeLimitCPU 180000
CpuTimeBetRestartFile 7200
MaxMemSize 3000
TimeBegin 0.0909091
TimeMax 1
ComovingIntegrationOn 1
Omega0 0.2814
OmegaLambda 0.7186
OmegaBaryon 0.0464
HubbleParam 0.697
Hubble 0.1
BoxSize 400000
OutputListOn 0
TimeBetSnapshot 1.83842
TimeOfFirstSnapshot 0.047619
TimeBetStatistics 0.05
NumFilesPerSnapshot 1
MaxFilesWithConcurrentIO 1
ErrTolIntAccuracy 0.012
CourantFac 0.15
MaxSizeTimestep 0.025
MinSizeTimestep 0
TypeOfOpeningCriterion 1
ErrTolTheta 0.9
ErrTolThetaMax 1
ErrTolForceAcc 0.0025
TopNodeFactor 2.5
ActivePartFracForNewDomainDecomp 0.01
DesNumNgb 64
MaxNumNgbDeviation 3
UnitLength_in_cm 3.08568e+21
UnitMass_in_g 1.989e+43
UnitVelocity_in_cm_per_s 100000
GravityConstantInternal 0
DesLinkNgb 20
SofteningComovingClass0 1.5
SofteningComovingClass1 1.5
SofteningComovingClass2 1.5
SofteningComovingClass3 1.5
SofteningComovingClass4 1.5
SofteningComovingClass5 1.5
SofteningMaxPhysClass0 1.5
SofteningMaxPhysClass1 1.5
SofteningMaxPhysClass2 1.5
SofteningMaxPhysClass3 1.5
SofteningMaxPhysClass4 1.5
SofteningMaxPhysClass5 1.5
SofteningClassOfPartType0 0
SofteningClassOfPartType1 0
SofteningClassOfPartType2 0
SofteningClassOfPartType3 0
SofteningClassOfPartType4 0
SofteningClassOfPartType5 0
ArtBulkViscConst 1
MinEgySpec 0
InitGasTemp 1000
MALLOC: Allocation of shared memory took 15.7867 sec
BEGRUN: Hubble (internal units) = 0.1
BEGRUN: h = 0.697
BEGRUN: G (internal units) = 43018.7
BEGRUN: UnitMass_in_g = 1.989e+43
BEGRUN: UnitLenth_in_cm = 3.08568e+21
BEGRUN: UnitTime_in_s = 3.08568e+16
BEGRUN: UnitVelocity_in_cm_per_s = 100000
BEGRUN: UnitDensity_in_cgs = 6.76991e-22
BEGRUN: UnitEnergy_in_cgs = 1.989e+53
READIC: filenr=0, 'output/snap_208.hdf5' contains:
READIC: Type 0 (gas): 60266526 (tot= 60266526) masstab= 0
READIC: Type 1: 73729883 (tot= 73729883) masstab= 0
READIC: Type 2: 0 (tot= 0) masstab= 0
READIC: Type 3: 0 (tot= 0) masstab= 0
READIC: Type 4: 1067 (tot= 1067) masstab= 0
READIC: Type 5: 0 (tot= 0) masstab= 0
READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 863.
READIC: reading block 0 (Coordinates)...
READIC: reading block 1 (Velocities)...
READIC: reading block 2 (ParticleIDs)...
READIC: reading block 3 (Masses)...
READIC: reading block 4 (InternalEnergy)...
READIC: reading block 5 (Density)...
Dataset Density not present for particle type 0, using zero.
READIC: reading block 6 (SmoothingLength)...
Dataset SmoothingLength not present for particle type 0, using zero.
READIC: reading done. Took 4.16064 sec, total size 6363.82 MB, corresponds to effective I/O rate of 1529.53 MB/sec
READIC: Total number of particles : 133997476
INIT: Testing ID uniqueness...
INIT: success. took=0.0700877 sec
DOMAIN: Begin domain decomposition (sync-point 0).
DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4
DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104
DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352
DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576
DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488
DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034
DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145
DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988
DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585
DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836
DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287
DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373
DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385
DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423
DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499
DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487
DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333
DOMAIN: NTopleaves=32628, determination of top-level tree involved 6 iterations and took 0.385008 sec
DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32
DOMAIN: total_cost=4 total_load=2
DOMAIN: best solution found after 1 iterations by task=174 for nextra=64, reaching maximum imbalance of 1.11104|1.112
DOMAIN: combining multiple-domains took 0.0148428 sec
DOMAIN: exchange of 73730950 particles
DOMAIN: particle exchange done. (took 0.20036 sec)
DOMAIN: domain decomposition done. (took in total 0.606014 sec)
PEANO: Begin Peano-Hilbert order...
PEANO: done, took 0.0314932 sec.
INIT: Converting u -> entropy All.cf_a3inv=512
FOF: Begin to compute FoF group catalogue... (presently allocated=85.2885 MB)
FOF: Comoving linking length: 11.3647
FOFTREE: Ngb-tree construction done. took 0.0525067 sec <numnodes>=73967 NTopnodes=37289 NTopleaves=32628
FOF: Start linking particles (presently allocated=96.8541 MB)
FOF: linking of small cells took 0.000738118 sec
FOF: local links done (took 0.0758537 sec, avg-work=0.0672735, imbalance=1.11188).
FOF: Marked=185630 out of the 73729883 primaries which are linked
FOF: begin linking across processors (presently allocated=97.8466 MB)
FOF: have done 17715 cross links (processed 185630, took 0.00376233 sec)
FOF: have done 3596 cross links (processed 90680, took 0.0031278 sec)
FOF: have done 557 cross links (processed 13014, took 0.00260543 sec)
FOF: have done 88 cross links (processed 1956, took 0.00244281 sec)
FOF: have done 18 cross links (processed 329, took 0.00237145 sec)
FOF: have done 3 cross links (processed 85, took 0.00229193 sec)
FOF: have done 0 cross links (processed 9, took 0.00231143 sec)
FOF: Local groups found.
FOF: primary group finding took = 0.099978 sec
FOF: Start finding nearest dm-particle (presently allocated=96.8541 MB)
FOF: fof-nearest iteration 1: need to repeat for 59254992 particles. (took = 0.0443082 sec)
FOF: fof-nearest iteration 2: need to repeat for 54338836 particles. (took = 0.0474859 sec)
FOF: fof-nearest iteration 3: need to repeat for 40016525 particles. (took = 0.0520389 sec)
FOF: fof-nearest iteration 4: need to repeat for 18819503 particles. (took = 0.0464987 sec)
FOF: fof-nearest iteration 5: need to repeat for 3429398 particles. (took = 0.0275666 sec)
FOF: fof-nearest iteration 6: need to repeat for 91516 particles. (took = 0.00793618 sec)
FOF: done finding nearest dm-particle
FOF: attaching gas and star particles to nearest dm particles took = 0.22989 sec
FOF: compiling local group data and catalogue took = 0.0130276 sec
FOF: Total number of FOF groups with at least 32 particles: 2188299
FOF: Largest FOF group has 122 particles.
FOF: Total number of particles in FOF groups: 133997476
FOF: group properties are now allocated.. (presently allocated=88.4899 MB)
FOF: computation of group properties took = 0.0064561 sec
FOF: start assigning group numbers
FOF: Assigning of group numbers took = 0.230491 sec
FOF: Finished computing FoF groups. Complete work took 0.750395 sec (presently allocated=86.1589 MB)
SUBFIND: We now execute a parallel version of SUBFIND.
TREE: Full tree construction for all particles. (presently allocated=91.3042 MB)
GRAVTREE: Tree construction done. took 0.150303 sec <numnodes>=88987.4 NTopnodes=37289 NTopleaves=32628 tree-build-scalability=0.581448
SUBFIND: finding total densities around all particles
SUBFIND: ngb iteration 1: need to repeat for 127834803 particles. (took 0.409298 sec)
SUBFIND: ngb iteration 2: need to repeat for 121354412 particles. (took 0.327751 sec)
SUBFIND: ngb iteration 3: need to repeat for 115450950 particles. (took 0.274435 sec)
SUBFIND: ngb iteration 4: need to repeat for 110565550 particles. (took 0.241108 sec)
SUBFIND: ngb iteration 5: need to repeat for 106225462 particles. (took 0.224802 sec)
SUBFIND: ngb iteration 6: need to repeat for 101279165 particles. (took 0.215286 sec)
SUBFIND: ngb iteration 7: need to repeat for 94022183 particles. (took 0.206938 sec)
SUBFIND: ngb iteration 8: need to repeat for 84119611 particles. (took 0.193008 sec)
SUBFIND: ngb iteration 9: need to repeat for 74467170 particles. (took 0.167794 sec)
SUBFIND: ngb iteration 10: need to repeat for 67707719 particles. (took 0.143014 sec)
SUBFIND: ngb iteration 11: need to repeat for 63930512 particles. (took 0.128167 sec)
SUBFIND: ngb iteration 12: need to repeat for 62056834 particles. (took 0.123207 sec)
SUBFIND: ngb iteration 13: need to repeat for 61156437 particles. (took 0.121726 sec)
SUBFIND: ngb iteration 14: need to repeat for 60711419 particles. (took 0.121686 sec)
SUBFIND: ngb iteration 15: need to repeat for 60480717 particles. (took 0.11977 sec)
SUBFIND: ngb iteration 16: need to repeat for 60345178 particles. (took 0.114084 sec)
SUBFIND: ngb iteration 17: need to repeat for 60242325 particles. (took 0.106198 sec)
SUBFIND: ngb iteration 18: need to repeat for 60144189 particles. (took 0.0975465 sec)
SUBFIND: ngb iteration 19: need to repeat for 60039091 particles. (took 0.0902718 sec)
SUBFIND: ngb iteration 20: need to repeat for 59914296 particles. (took 0.085822 sec)
SUBFIND: ngb iteration 21: need to repeat for 59743978 particles. (took 0.0846736 sec)
SUBFIND: ngb iteration 22: need to repeat for 59500094 particles. (took 0.0851437 sec)
SUBFIND: ngb iteration 23: need to repeat for 59147075 particles. (took 0.0862821 sec)
SUBFIND: ngb iteration 24: need to repeat for 58622296 particles. (took 0.0883603 sec)
SUBFIND: ngb iteration 25: need to repeat for 57837567 particles. (took 0.0901407 sec)
SUBFIND: ngb iteration 26: need to repeat for 56659066 particles. (took 0.0930469 sec)
SUBFIND: ngb iteration 27: need to repeat for 54919600 particles. (took 0.0969935 sec)
SUBFIND: ngb iteration 28: need to repeat for 52418236 particles. (took 0.101881 sec)
SUBFIND: ngb iteration 29: need to repeat for 49001231 particles. (took 0.108046 sec)
SUBFIND: ngb iteration 30: need to repeat for 44707003 particles. (took 0.115066 sec)
SUBFIND: ngb iteration 31: need to repeat for 39766552 particles. (took 0.122411 sec)
SUBFIND: ngb iteration 32: need to repeat for 34664958 particles. (took 0.127335 sec)
SUBFIND: ngb iteration 33: need to repeat for 29715256 particles. (took 0.126614 sec)
SUBFIND: ngb iteration 34: need to repeat for 24953136 particles. (took 0.11622 sec)
SUBFIND: ngb iteration 35: need to repeat for 20205353 particles. (took 0.101446 sec)
SUBFIND: ngb iteration 36: need to repeat for 15523756 particles. (took 0.0847247 sec)
SUBFIND: ngb iteration 37: need to repeat for 11111817 particles. (took 0.0683458 sec)
SUBFIND: ngb iteration 38: need to repeat for 7259771 particles. (took 0.0519814 sec)
SUBFIND: ngb iteration 39: need to repeat for 4235836 particles. (took 0.0369275 sec)
SUBFIND: ngb iteration 40: need to repeat for 2155627 particles. (took 0.0247914 sec)
SUBFIND: ngb iteration 41: need to repeat for 931398 particles. (took 0.0153119 sec)
SUBFIND: ngb iteration 42: need to repeat for 334343 particles. (took 0.00826572 sec)
SUBFIND: ngb iteration 43: need to repeat for 96850 particles. (took 0.00434606 sec)
SUBFIND: ngb iteration 44: need to repeat for 22172 particles. (took 0.00200983 sec)
SUBFIND: ngb iteration 45: need to repeat for 3814 particles. (took 0.000874497 sec)
SUBFIND: ngb iteration 46: need to repeat for 454 particles. (took 0.000408871 sec)
SUBFIND: ngb iteration 47: need to repeat for 33 particles. (took 0.000280682 sec)
SUBFIND: iteration to correct primary neighbor count and density estimate took 5.35781 sec
SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0
SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0
SUBFIND: (The adopted size-limit for the collective algorithm was 133997476 particles, for threshold size factor 0.6)
SUBFIND: The other 2188299 FOF halos are treated in parallel with serial code
SUBFIND: subfind_distribute_groups() took 0.00435326 sec
SUBFIND: particle balance=1.11101
SUBFIND: subfind_exchange() took 0.231211 sec
SUBFIND: particle balance for processing=1.00049
SUBFIND: subdomain decomposition took 0.0513943 sec
SUBFIND: serial subfind subdomain decomposition took 0.0508743 sec
SUBFIND: subfind_hbt_single_group() processing for Ngroups=2533 took 25.4827 sec
SUBFIND: root-task=0: Serial processing of halo 0 took 25.6069
SUBFIND: Processing overall took (total time=26.4693 sec)
SUBFIND: 0 out of 2552 decisions, fraction 0, where influenced by previous subhalo size
ALLOCATE: Changing to MaxPart = 258485
ALLOCATE: Changing to MaxPartSph = 116255
SUBFIND: subfind_exchange() (for return to original CPU) took 0.254584 sec
TREE: Full tree construction for all particles. (presently allocated=78.467 MB)
GRAVTREE: Tree construction done. took 0.805353 sec <numnodes>=88987.4 NTopnodes=37289 NTopleaves=32628 tree-build-scalability=0.581448
SUBFIND: SO iteration 1: need to repeat for 2188191 halo centers. (took 0.0211449 sec)
SUBFIND: SO iteration 2: need to repeat for 2188191 halo centers. (took 0.0190031 sec)
SUBFIND: SO iteration 3: need to repeat for 2188191 halo centers. (took 0.019148 sec)
SUBFIND: SO iteration 4: need to repeat for 2188191 halo centers. (took 0.0190252 sec)
SUBFIND: SO iteration 5: need to repeat for 2188191 halo centers. (took 0.0189526 sec)
SUBFIND: SO iteration 6: need to repeat for 2188191 halo centers. (took 0.0194257 sec)
SUBFIND: SO iteration 7: need to repeat for 2188191 halo centers. (took 0.0198134 sec)
SUBFIND: SO iteration 8: need to repeat for 2188191 halo centers. (took 0.0202891 sec)
SUBFIND: SO iteration 9: need to repeat for 2188191 halo centers. (took 0.0202556 sec)
SUBFIND: SO iteration 10: need to repeat for 2188191 halo centers. (took 0.0200064 sec)
SUBFIND: SO iteration 11: need to repeat for 2188191 halo centers. (took 0.0199556 sec)
SUBFIND: SO iteration 12: need to repeat for 2188191 halo centers. (took 0.0200554 sec)
SUBFIND: SO iteration 13: need to repeat for 2188191 halo centers. (took 0.019891 sec)
SUBFIND: SO iteration 14: need to repeat for 2188191 halo centers. (took 0.0196479 sec)
SUBFIND: SO iteration 15: need to repeat for 2188191 halo centers. (took 0.0196431 sec)
SUBFIND: SO iteration 16: need to repeat for 198556 halo centers. (took 0.0189748 sec)
SUBFIND: SO iteration 17: need to repeat for 1390 halo centers. (took 0.00688686 sec)
SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000303993 sec)
SUBFIND: SO iteration 1: need to repeat for 2188191 halo centers. (took 0.0193835 sec)
SUBFIND: SO iteration 2: need to repeat for 2188191 halo centers. (took 0.0186716 sec)
SUBFIND: SO iteration 3: need to repeat for 2188191 halo centers. (took 0.0190691 sec)
SUBFIND: SO iteration 4: need to repeat for 2188191 halo centers. (took 0.019117 sec)
SUBFIND: SO iteration 5: need to repeat for 2188191 halo centers. (took 0.0189571 sec)
SUBFIND: SO iteration 6: need to repeat for 2188191 halo centers. (took 0.0190206 sec)
SUBFIND: SO iteration 7: need to repeat for 2188191 halo centers. (took 0.0189468 sec)
SUBFIND: SO iteration 8: need to repeat for 2188191 halo centers. (took 0.0189633 sec)
SUBFIND: SO iteration 9: need to repeat for 2188191 halo centers. (took 0.0189553 sec)
SUBFIND: SO iteration 10: need to repeat for 2188191 halo centers. (took 0.0189398 sec)
SUBFIND: SO iteration 11: need to repeat for 2188191 halo centers. (took 0.0189568 sec)
SUBFIND: SO iteration 12: need to repeat for 2188191 halo centers. (took 0.0189631 sec)
SUBFIND: SO iteration 13: need to repeat for 2188191 halo centers. (took 0.0189817 sec)
SUBFIND: SO iteration 14: need to repeat for 2188191 halo centers. (took 0.0189668 sec)
SUBFIND: SO iteration 15: need to repeat for 2188190 halo centers. (took 0.0189409 sec)
SUBFIND: SO iteration 16: need to repeat for 118475 halo centers. (took 0.0185498 sec)
SUBFIND: SO iteration 17: need to repeat for 811 halo centers. (took 0.00487562 sec)
SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000288958 sec)
SUBFIND: SO iteration 1: need to repeat for 2188191 halo centers. (took 0.0191115 sec)
SUBFIND: SO iteration 2: need to repeat for 2188191 halo centers. (took 0.0187829 sec)
SUBFIND: SO iteration 3: need to repeat for 2188191 halo centers. (took 0.0190218 sec)
SUBFIND: SO iteration 4: need to repeat for 2188191 halo centers. (took 0.0189281 sec)
SUBFIND: SO iteration 5: need to repeat for 2188191 halo centers. (took 0.0189201 sec)
SUBFIND: SO iteration 6: need to repeat for 2188191 halo centers. (took 0.0189982 sec)
SUBFIND: SO iteration 7: need to repeat for 2188191 halo centers. (took 0.0189438 sec)
SUBFIND: SO iteration 8: need to repeat for 2188191 halo centers. (took 0.0189314 sec)
SUBFIND: SO iteration 9: need to repeat for 2188191 halo centers. (took 0.0189398 sec)
SUBFIND: SO iteration 10: need to repeat for 2188191 halo centers. (took 0.0189064 sec)
SUBFIND: SO iteration 11: need to repeat for 2188191 halo centers. (took 0.018922 sec)
SUBFIND: SO iteration 12: need to repeat for 2188191 halo centers. (took 0.0188932 sec)
SUBFIND: SO iteration 13: need to repeat for 2188191 halo centers. (took 0.0189408 sec)
SUBFIND: SO iteration 14: need to repeat for 2188191 halo centers. (took 0.0189488 sec)
SUBFIND: SO iteration 15: need to repeat for 2188191 halo centers. (took 0.0189516 sec)
SUBFIND: SO iteration 16: need to repeat for 203793 halo centers. (took 0.0185727 sec)
SUBFIND: SO iteration 17: need to repeat for 1483 halo centers. (took 0.00679752 sec)
SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000313301 sec)
SUBFIND: SO iteration 1: need to repeat for 2188191 halo centers. (took 0.0190473 sec)
SUBFIND: SO iteration 2: need to repeat for 2188191 halo centers. (took 0.0187753 sec)
SUBFIND: SO iteration 3: need to repeat for 2188191 halo centers. (took 0.0183421 sec)
SUBFIND: SO iteration 4: need to repeat for 2188191 halo centers. (took 0.0185435 sec)
SUBFIND: SO iteration 5: need to repeat for 2188191 halo centers. (took 0.0185851 sec)
SUBFIND: SO iteration 6: need to repeat for 2188191 halo centers. (took 0.0185938 sec)
SUBFIND: SO iteration 7: need to repeat for 2188191 halo centers. (took 0.0186132 sec)
SUBFIND: SO iteration 8: need to repeat for 2188191 halo centers. (took 0.018605 sec)
SUBFIND: SO iteration 9: need to repeat for 2188191 halo centers. (took 0.0188825 sec)
SUBFIND: SO iteration 10: need to repeat for 2188191 halo centers. (took 0.0185675 sec)
SUBFIND: SO iteration 11: need to repeat for 2188191 halo centers. (took 0.0188255 sec)
SUBFIND: SO iteration 12: need to repeat for 2188191 halo centers. (took 0.0185899 sec)
SUBFIND: SO iteration 13: need to repeat for 2188191 halo centers. (took 0.0191317 sec)
SUBFIND: SO iteration 14: need to repeat for 2188191 halo centers. (took 0.0191455 sec)
SUBFIND: SO iteration 15: need to repeat for 2188191 halo centers. (took 0.0187427 sec)
SUBFIND: SO iteration 16: need to repeat for 1900590 halo centers. (took 0.0188932 sec)
SUBFIND: SO iteration 17: need to repeat for 199044 halo centers. (took 0.0172243 sec)
SUBFIND: SO iteration 18: need to repeat for 19374 halo centers. (took 0.00669869 sec)
SUBFIND: determining spherical overdensity masses took 1.27031 sec
SUBFIND: assembled and ordered groups and subhalos (took 0.251907 sec)
FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1)
FOF/SUBFIND: writing group catalogue block 0 (GroupLen)...
FOF/SUBFIND: writing group catalogue block 1 (GroupMass)...
FOF/SUBFIND: writing group catalogue block 2 (GroupPos)...
FOF/SUBFIND: writing group catalogue block 3 (GroupVel)...
FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)...
FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)...
FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)...
FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)...
FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)...
FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)...
FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)...
FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)...
FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)...
FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)...
FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)...
FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)...
FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)...
FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)...
FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)...
FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)...
FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)...
FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)...
FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)...
FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)...
FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)...
FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)...
FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)...
FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)...
FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)...
FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)...
FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)...
FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)...
FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)...
FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)...
FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)...
FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)...
FOF/SUBFIND: Group catalogues saved. took = 4.33839 sec, total size 818.572 MB, corresponds to effective I/O rate of 188.681 MB/sec
SUBFIND: Subgroup catalogues saved. took = 4.33973 sec
SUBFIND: Finished with SUBFIND. (total time=39.1791 sec)
SUBFIND: Total number of subhalos with at least 20 particles: 2190713
SUBFIND: Largest subhalo has 122 particles/cells.
SUBFIND: Total number of particles/cells in subhalos: 133990084
FOF: preparing output order of particles took 0.950499 sec
SNAPSHOT: writing snapshot file #208 @ time 0.125 ...
SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1)
SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5'
SNAPSHOT: writing snapshot block 0 (Coordinates)...
SNAPSHOT: writing snapshot block 1 (Velocities)...
SNAPSHOT: writing snapshot block 2 (ParticleIDs)...
SNAPSHOT: writing snapshot block 3 (Masses)...
SNAPSHOT: writing snapshot block 4 (InternalEnergy)...
SNAPSHOT: writing snapshot block 5 (Density)...
SNAPSHOT: writing snapshot block 6 (SmoothingLength)...
SNAPSHOT: done with writing snapshot. Took 8.61884 sec, total size 5290.13 MB, corresponds to effective I/O rate of 613.787 MB/sec
endrun called, calling MPI_Finalize()
bye!
Abort(806969615) on node 138 (rank 138 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack:
PMPI_Finalize(214)...............: MPI_Finalize failed
PMPI_Finalize(159)...............:
MPID_Finalize(1288)..............:
MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy)
Abort(806969615) on node 131 (rank 131 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack:
PMPI_Finalize(214)...............: MPI_Finalize failed
PMPI_Finalize(159)...............:
MPID_Finalize(1288)..............:
MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy)
TACC: MPI job exited with code: 15
TACC: Shutdown complete. Exiting.